Hi,

in a huge analysis pipeline, I finally found the specific problem which for
me is of utmost irritation.
So in short, when running a macro in headless mode from the command line,
the sigma parameter of
the standard Gaussian Filter seems not to be captured by the macro
interpreter.

Here is a dummy example:

open('path-to-image');
name = getTitle()

run("Duplicate...", "title=Dup");

run("Gaussian Blur...", "sigma=5");
save('gaussian1.tif');

selectImage(name)

run("Gaussian Blur...", "sigma=1");
save('gaussian2.tif');

When calling this macro from the ImageJ in Gui (so normal) mode, everything
works as expected.
But when calling this macro from the commandline like 'ImageJ-macosx
--headless -macro dummy.ijm'
the two produced images will be the same, meaning that sigma most likely was
set to a default value.

I was somehow lucky to even find this, what I suppose is a, bug.

I am running Fiji with ImageJ version 149m on Mac OS 10.10.

It is really annoying that I am stuck now with the automatization because of
this silly detail, any help appreciated !

Greets,
Greg



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